Package: bioregion
Type: Package
Title: Comparison of Bioregionalization Methods
Version: 1.4.0.9000
Authors@R: 
    c(person(given = "Maxime",
              family = "Lenormand",
              email = "maxime.lenormand@inrae.fr",
              role = c("aut", "cre"),
              comment = c(ORCID = "0000-0001-6362-3473")),
       person(given = "Boris",
              family = "Leroy",
              role = c("aut"),
              email = "boris.leroy@gmail.com",
              comment = c(ORCID = "0000-0002-7686-4302")),
       person(given = "Pierre",
             family = "Denelle",
             role = c("aut"),
             email = "pierre.denelle@gmail.com",
             comment = c(ORCID = "0000-0001-5037-2281"))
       )
Description: The main purpose of this package is to propose a
        transparent methodological framework to compare
        bioregionalization methods based on hierarchical and
        non-hierarchical clustering algorithms (Kreft & Jetz (2010)
        <doi:10.1111/j.1365-2699.2010.02375.x>) and network algorithms
        (Lenormand et al. (2019) <doi:10.1002/ece3.4718> and Leroy et
        al. (2019) <doi:10.1111/jbi.13674>).
Depends: R (>= 4.0.0)
License: GPL-3
Encoding: UTF-8
LazyData: true
Imports: ape, apcluster, bipartite, cluster, data.table, dbscan,
        dynamicTreeCut, fastcluster, fastkmedoids, ggplot2, grDevices,
        httr, igraph, mathjaxr, Matrix, phangorn, rcartocolor, Rdpack,
        rlang, rmarkdown, segmented, sf, stats, tidyr, utils
RdMacros: mathjaxr, Rdpack
LinkingTo: Rcpp
Suggests: ade4, adespatial, betapart, dplyr, ecodist, knitr,
        microbenchmark, rnaturalearth, rnaturalearthdata, terra,
        testthat (>= 3.0.0), vegan
VignetteBuilder: knitr
RoxygenNote: 7.3.3
URL: https://github.com/bioRgeo/bioregion,
        https://bioRgeo.github.io/bioregion/
BugReports: https://github.com/bioRgeo/bioregion/issues
Config/testthat/edition: 3
Roxygen: list(markdown = TRUE)
Config/pak/sysreqs: libabsl-dev cmake libgdal-dev gdal-bin libgeos-dev
        libglpk-dev make libicu-dev libuv1-dev libxml2-dev libssl-dev
        libproj-dev libsqlite3-dev libudunits2-dev
Repository: https://biorgeo.r-universe.dev
Date/Publication: 2026-04-22 09:22:30 UTC
RemoteUrl: https://github.com/biorgeo/bioregion
RemoteRef: HEAD
RemoteSha: a9f10b539e0d79a7ba1a0ce85f920ae3c5cf8689
NeedsCompilation: yes
Packaged: 2026-06-21 08:52:15 UTC; root
Author: Maxime Lenormand [aut, cre] (ORCID:
    <https://orcid.org/0000-0001-6362-3473>),
  Boris Leroy [aut] (ORCID: <https://orcid.org/0000-0002-7686-4302>),
  Pierre Denelle [aut] (ORCID: <https://orcid.org/0000-0001-5037-2281>)
Maintainer: Maxime Lenormand <maxime.lenormand@inrae.fr>